SCCNV: A software tool for identifying copy number variation from single-cell whole genome sequencing. Dong X et al., Frontiers in Genetics 2020. https://github.com/biosinodx/SCCNV
SCcaller: Identify single nucleotide variations from single cell sequencing data. Dong X et al., Nature Methods 2017. https://github.com/biosinodx/SCcaller
cisASE: A likelihood-based method for detecting putative cis-regulated allele-specific expression in RNA sequencing data. Liu Z, et al., Bioinformatics 2016. https://github.com/bioinfolz/cisASE
3DGD: A database of genome 3D structure. Li C, et al., Bioinformatics 2014. http://3dgd.biosino.org (Website no longer available)